Package: TADCompare
Title: TADCompare: Identification and characterization of differential
        TADs
Version: 1.23.0
Authors@R: c(
    person(given = "Mikhail",
           family = "Dozmorov",
           role = c("aut", "cre"),
           email = "mikhail.dozmorov@gmail.com",
           comment = c(ORCID = "0000-0002-0086-8358")),
    person(given = "Kellen",
           family = "Cresswell",
           role = c("aut"))
           )
Description: TADCompare is an R package designed to identify and
        characterize differential Topologically Associated Domains
        (TADs) between multiple Hi-C contact matrices. It contains
        functions for finding differential TADs between two datasets,
        finding differential TADs over time and identifying consensus
        TADs across multiple matrices. It takes all of the main types
        of HiC input and returns simple, comprehensive, easy to analyze
        results.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: dplyr, PRIMME, cluster, Matrix, magrittr, HiCcompare, ggplot2,
        tidyr, ggpubr, RColorBrewer, reshape2, cowplot
Suggests: BiocStyle, knitr, rmarkdown, microbenchmark, testthat, covr,
        pheatmap, SpectralTAD, magick, qpdf
Depends: R (>= 4.0)
VignetteBuilder: knitr
biocViews: Software, HiC, Sequencing, FeatureExtraction, Clustering
BugReports: https://github.com/dozmorovlab/TADCompare/issues
URL: https://github.com/dozmorovlab/TADCompare
RoxygenNote: 7.3.1
Config/pak/sysreqs: cmake make libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:52:50 UTC
RemoteUrl: https://github.com/bioc/TADCompare
RemoteRef: HEAD
RemoteSha: bd28a95824a1047d50d485fb08339a23760458ab
NeedsCompilation: no
Packaged: 2026-07-04 22:41:43 UTC; root
Author: Mikhail Dozmorov [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0086-8358>),
  Kellen Cresswell [aut]
Maintainer: Mikhail Dozmorov <mikhail.dozmorov@gmail.com>