NEWS

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SynMut 1.1.5 (2022-06-03)

• Enhancement: add other non-standard genetic codes for functions codon_random, dinu_to, codon_mimic.

SynMut 1.1.4 (2020-11-12)

• bug fix: fix for function codon_mimic.

SynMut 1.1.3 (2019-05-08)

• Revise dinu_to.keep algorithm, enhance performance.

SynMut 1.1.2 (2019-05-08)

• Bug fix: "dinu_to" ifelse issue in get_optimal_codon.

SynMut 1.1.1 (2019-05-06)

• Bug fix: "dinu_to" fix wrong result with "keep == TRUE" parameter.

SynMut 1.1.0 (2019-05-06)

• Bump

SynMut 0.99.12 (2019-04-29)

• Important bug fix in function "dinu_to": fixed wrong result in sample methods.

SynMut 0.99.11 (2019-04-29)

• Important bug fix in function "get_du": fixed the step parameter in oligonucleotideFrequency.

SynMut 0.99.10 (2019-04-23)

• Update documents.

SynMut 0.99.9 (2019-04-23)

• Reduced dependency on seqinr.

SynMut 0.99.8 (2019-04-23)

• Updated DESCRIPTION.

SynMut 0.99.7 (2019-04-23)

• Updated NAMESPACE.

SynMut 0.99.6 (2019-04-23)

• Updated the Bioconductor installation instructions in readme and vignette.

SynMut 0.99.5 (2019-04-23)

• Added bioconductor installation instructions to README and vignette.
• Added comments to vignette to make workflow more clear.
• Duplicated code in the following functions were converted to helper functions. o codon_random.R o codon_to.R o dinu_to.R o codon_mimic.R
• Added region_related.R to store the helper functions related to extracting or merging region.
• Eliminated 67 lines of duplicated code in dinu_to.R
• Eliminated duplicated code in input_seq.R

SynMut 0.99.0 (2019-04-16)

• Submitted to Bioconductor