Package: SynExtend
Type: Package
Title: Tools for Comparative Genomics
Version: 1.25.2
Authors@R: c(
	person("Nicholas", "Cooley", email = "npc19@pitt.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6029-304X")),
	person("Aidan", "Lakshman", email = "ahl27@pitt.edu", role = c("aut", "ctb"), comment = c(ORCID = "0000-0002-9465-6785")),
	person("Adelle", "Fernando", email = "Adelle.fernando@gmail.com", role = "ctb"),
	person("Erik", "Wright", email = "ESWRIGHT@pitt.edu", role = "aut"))
biocViews: Genetics, Clustering, ComparativeGenomics, DataImport
Description: A multitude of tools for comparative genomics, focused on
        large-scale analyses of biological data. SynExtend includes
        tools for working with syntenic data, clustering massive
        network structures, and estimating functional relationships
        among genes.
Depends: R (>= 4.5.0), DECIPHER (>= 2.28.0)
Imports: methods, Biostrings, S4Vectors, IRanges, utils, stats,
        parallel, graphics, grDevices, RSQLite, DBI
Suggests: BiocStyle, knitr, igraph, markdown, rmarkdown, rtracklayer
License: GPL-3
ByteCompile: true
Encoding: UTF-8
NeedsCompilation: yes
VignetteBuilder: knitr
URL: https://github.com/npcooley/SynExtend
BugReports: https://github.com/npcooley/SynExtend/issues/new/
LazyLoad: true
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-06-18 12:00:17 UTC
RemoteUrl: https://github.com/bioc/SynExtend
RemoteRef: HEAD
RemoteSha: 8077d0c9fb004ff1eab0212ce190c48f2587cc01
Packaged: 2026-06-18 17:04:40 UTC; root
Author: Nicholas Cooley [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6029-304X>),
  Aidan Lakshman [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-9465-6785>),
  Adelle Fernando [ctb],
  Erik Wright [aut]
Maintainer: Nicholas Cooley <npc19@pitt.edu>