Package: Summix
Title: Summix2: A suite of methods to estimate, adjust, and leverage
        substructure in genetic summary data
Version: 2.19.0
Authors@R: c(person("Audrey", "Hendricks", email = "audrey.hendricks@cuanschutz.edu", role = "cre"), person("Price", "Adelle", email = "adelle.price@cuanschutz.edu", role = "aut"),person("Stoneman", "Haley", email = "hayley.stoneman@cuanschutz.edu", role = "aut"))
Description: This package contains the Summix2 method for estimating
        and adjusting for substructure in genetic summary allele
        frequency data. The function summix() estimates reference group
        proportions using a mixture model. The adjAF() function
        produces adjusted allele frequencies for an observed group with
        reference group proportions matching a target individual or
        sample. The summix_local() function estimates local ancestry
        mixture proportions and performs selection scans in genetic
        summary data.
License: MIT + file LICENSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Suggests: rmarkdown, markdown, knitr, testthat (>= 3.0.0)
biocViews: StatisticalMethod, WholeGenome, Genetics
VignetteBuilder: knitr
Encoding: UTF-8
Depends: R (>= 4.3)
Imports: dplyr, nloptr, magrittr, methods, tibble, tidyselect,
        BEDASSLE, scales, visNetwork, randomcoloR
LazyData: true
BugReports: https://github.com/Bioconductor/Summix/issues
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        libnode-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:55:00 UTC
RemoteUrl: https://github.com/bioc/Summix
RemoteRef: HEAD
RemoteSha: 945d819a04b8c18d72a3f7e740af3f675e55f8e4
NeedsCompilation: no
Packaged: 2026-07-20 05:44:02 UTC; root
Author: Audrey Hendricks [cre],
  Price Adelle [aut],
  Stoneman Haley [aut]
Maintainer: Audrey Hendricks <audrey.hendricks@cuanschutz.edu>