Package: SubcellularSpatialData
Title: Annotated spatial transcriptomics datasets from 10x Xenium,
        NanoString CosMx and BGI STOmics.
Version: 1.9.0
Authors@R: c(
            person(given = "Dharmesh D.",
                   family = "Bhuva",
                   role = c("aut", "cre"),
                   email = "dharmesh.bhuva@adelaide.edu.au",
                   comment = c(ORCID = "0000-0002-6398-9157"))
            )
Description: This is a data package that hosts annotated sub-cellular
        localised datasets from the STOmics, Xenium and CosMx
        platforms. Specifically, it hosts datasets analysed in the
        publication Bhuva et. al, 2024 titled "Library size confounds
        biology in spatial transcriptomics data". Raw transcript
        detections are hosted and functions to convert them to
        SpatialExperiment objects have been implemented.
biocViews: ExperimentHub, SpatialData, Homo_sapiens_Data,
        Mus_musculus_Data, LungCancerData
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
URL: https://davislaboratory.github.io/SubcellularSpatialData
BugReports: https://github.com/DavisLaboratory/SubcellularSpatialData/issues
Imports: dplyr, hexbin, Matrix, SpatialExperiment, stats
NeedsCompilation: no
VignetteBuilder: knitr
Suggests: BiocStyle, ExperimentHub, ggplot2, knitr, prettydoc,
        rmarkdown, testthat (>= 3.0.0)
Depends: R (>= 4.4)
LazyData: false
Config/testthat/edition: 3
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:37:17 UTC
RemoteUrl: https://github.com/bioc/SubcellularSpatialData
RemoteRef: HEAD
RemoteSha: 7a2f671d3e71b27538e2440fc5a41ccc615d8aa9
Packaged: 2026-10-26 12:00:35 UTC; root
Author: Dharmesh D. Bhuva [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6398-9157>)
Maintainer: Dharmesh D. Bhuva <dharmesh.bhuva@adelaide.edu.au>