Package: StructuralVariantAnnotation
Type: Package
Title: Variant annotations for structural variants
Version: 1.29.0
Date: 2024-04-23
Authors@R: c(
	person("Daniel", "Cameron", email="daniel.l.cameron@gmail.com", role=c("aut", "cre"), comment=c(ORCID = "0000-0002-0951-7116")),
	person("Ruining", "Dong", role=c("aut"), comment=c(ORCID = "0000-0003-1433-0484")))
Description: StructuralVariantAnnotation provides a framework for
        analysis of structural variants within the Bioconductor
        ecosystem. This package contains contains useful helper
        functions for dealing with structural variants in VCF format.
        The packages contains functions for parsing VCFs from a number
        of popular callers as well as functions for dealing with
        breakpoints involving two separate genomic loci encoded as
        GRanges objects.
License: GPL-3 + file LICENSE
Depends: GenomicRanges, rtracklayer, VariantAnnotation, BiocGenerics, R
        (>= 4.1.0)
Imports: assertthat, Biostrings, pwalign, stringr, dplyr, methods,
        rlang, GenomicFeatures, IRanges, S4Vectors,
        SummarizedExperiment, GenomeInfoDb,
Suggests: ggplot2, devtools, testthat (>= 2.1.0), roxygen2, rmarkdown,
        tidyverse, knitr, ggbio, biovizBase,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: DataImport, Sequencing, Annotation, Genetics,
        VariantAnnotation
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:18 UTC
RemoteUrl: https://github.com/bioc/StructuralVariantAnnotation
RemoteRef: HEAD
RemoteSha: aaa2e0945f9d8f99225e5be557440763a8416cbe
NeedsCompilation: no
Packaged: 2026-07-03 22:09:40 UTC; root
Author: Daniel Cameron [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0951-7116>),
  Ruining Dong [aut] (ORCID: <https://orcid.org/0000-0003-1433-0484>)
Maintainer: Daniel Cameron <daniel.l.cameron@gmail.com>