Package: Statial
Type: Package
Title: A package to identify changes in cell state relative to spatial
        associations
Version: 1.15.4
Date: 2025-10-14
Authors@R: c(person("Farhan", "Ameen", email = "fame2827@uni.sydney.edu.au",
    role = c("aut", "cre")),
    person("Sourish", "Iyengar", email = "sourish.iyengar@sydney.edu.au",
    role = c("aut")),
    person("Alex", "Qin", email = "alex.qin@sydney.edu.au",
    role = c("aut")),
    person("Shila", "Ghazanfar", email = "shila.ghazanfar@sydney.edu.au",
    role = c("aut")),
    person("Ellis", "Patrick", email = "ellis.patrick@sydney.edu.au",
    role = c("aut")))
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: SingleCell, Spatial, Classification
Depends: R (>= 4.1.0)
Imports: BiocParallel, RhpcBLASctl, spatstat.geom, data.table, dplyr,
        tidyr, SingleCellExperiment, tibble, stringr, ggplot2, methods,
        stats, SummarizedExperiment, ranger, limma, SpatialExperiment,
        edgeR, spicyR (>= 1.99.3), Rcpp
LinkingTo: Rcpp
Suggests: plotly, treekoR, BiocStyle, knitr, testthat (>= 3.0.0),
        ClassifyR, ggsurvfit, lisaClust, survival
Description: Statial is a suite of functions for identifying changes in
        cell state. The functionality provided by Statial provides
        robust quantification of cell type localisation which are
        invariant to changes in tissue structure. In addition to this
        Statial uncovers changes in marker expression associated with
        varying levels of localisation. These features can be used to
        explore how the structure and function of different cell types
        may be altered by the agents they are surrounded with.
License: GPL-3
Copyright: The C++ port of concaveman in src/concaveman.cpp: see
        inst/COPYRIGHTS.
Config/testthat/edition: 3
URL: https://sydneybiox.github.io/Statial
        https://github.com/SydneyBioX/Statial/issues,
        https://sydneybiox.github.io/Statial/
BugReports: https://github.com/SydneyBioX/Statial/issues
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-10-14 01:54:25 UTC
RemoteUrl: https://github.com/bioc/Statial
RemoteRef: HEAD
RemoteSha: 3d04158568e8a4240edf5b52161ef749c3b5f303
NeedsCompilation: yes
Packaged: 2026-10-14 08:01:48 UTC; root
Author: Farhan Ameen [aut, cre],
  Sourish Iyengar [aut],
  Alex Qin [aut],
  Shila Ghazanfar [aut],
  Ellis Patrick [aut]
Maintainer: Farhan Ameen <fame2827@uni.sydney.edu.au>