Package: Statial
Type: Package
Title: A package to identify changes in cell state relative to spatial
        associations
Version: 1.15.0
Date: 2025-10-14
Authors@R: c(person("Farhan", "Ameen", email = "fame2827@uni.sydney.edu.au",
    role = c("aut", "cre")),
    person("Sourish", "Iyengar", email = "sourish.iyengar@sydney.edu.au",
    role = c("aut")),
    person("Alex", "Qin", email = "alex.qin@sydney.edu.au",
    role = c("aut")),
    person("Shila", "Ghazanfar", email = "shila.ghazanfar@sydney.edu.au",
    role = c("aut")),
    person("Ellis", "Patrick", email = "ellis.patrick@sydney.edu.au",
    role = c("aut")))
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: SingleCell, Spatial, Classification
Depends: R (>= 4.1.0)
Imports: BiocParallel, spatstat.geom, concaveman, data.table,
        spatstat.explore, dplyr, tidyr, SingleCellExperiment, tibble,
        stringr, tidyselect, ggplot2, methods, stats,
        SummarizedExperiment, S4Vectors, plotly, purrr, ranger,
        magrittr, limma, SpatialExperiment, cluster, treekoR, edgeR
Suggests: BiocStyle, knitr, testthat (>= 3.0.0), ClassifyR, spicyR,
        ggsurvfit, lisaClust, survival
Description: Statial is a suite of functions for identifying changes in
        cell state. The functionality provided by Statial provides
        robust quantification of cell type localisation which are
        invariant to changes in tissue structure. In addition to this
        Statial uncovers changes in marker expression associated with
        varying levels of localisation. These features can be used to
        explore how the structure and function of different cell types
        may be altered by the agents they are surrounded with.
License: GPL-3
RoxygenNote: 7.3.3
Config/testthat/edition: 3
URL: https://sydneybiox.github.io/Statial
        https://github.com/SydneyBioX/Statial/issues
BugReports: https://github.com/SydneyBioX/Statial/issues
Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev
        make libmagick++-dev gsfonts libicu-dev libpng-dev libuv1-dev
        libxml2-dev libssl-dev perl libproj-dev libsqlite3-dev
        libudunits2-dev libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:59:25 UTC
RemoteUrl: https://github.com/bioc/Statial
RemoteRef: HEAD
RemoteSha: 97ee04a497fe5c8cba741d695025efef36bf3947
NeedsCompilation: no
Packaged: 2026-05-30 09:45:58 UTC; root
Author: Farhan Ameen [aut, cre],
  Sourish Iyengar [aut],
  Alex Qin [aut],
  Shila Ghazanfar [aut],
  Ellis Patrick [aut]
Maintainer: Farhan Ameen <fame2827@uni.sydney.edu.au>