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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SpotSweeper" in publications use:'
type: software
license: MIT
title: 'SpotSweeper: Spatially-aware quality control for spatial transcriptomics'
version: 1.1.0
doi: 10.18129/B9.bioc.SpotSweeper
abstract: Spatially-aware quality control (QC) software for both spot-level and artifact-level
  QC in spot-based spatial transcripomics, such as 10x Visium. These methods calculate
  local (nearest-neighbors) mean and variance of standard QC metrics (library size,
  unique genes, and mitochondrial percentage) to identify outliers spot and large
  technical artifacts. Scales linearly with the number of spots and is designed to
  be used with 'SpatialExperiment' objects.
authors:
- family-names: Totty
  given-names: Michael
  email: mictott@gmail.com
  orcid: https://orcid.org/0000-0002-9292-8556
- family-names: Guo
  given-names: Boyi
  email: boyi.guo.work@gmail.com
  orcid: https://orcid.org/0000-0003-2950-2349
preferred-citation:
  type: manual
  title: 'SpotSweeper: Spot and artifact-level quality control for spatially-resolved
    transcriptomics data'
  authors:
  - name: MicTott
  year: '2024'
  url: http://www.bioconductor.org/packages/SpotSweeper
  notes: https://github.com/MicTott/SpotSweeper/SpotSweeper - R package version 1.1.0
  doi: 10.18129/B9.bioc.SpotSweeper
repository: https://bioc.r-universe.dev
repository-code: https://github.com/MicTott/SpotSweeper
url: https://support.bioconductor.org/tag/SpotSweeper
date-released: '2024-04-10'
contact:
- family-names: Totty
  given-names: Michael
  email: mictott@gmail.com
  orcid: https://orcid.org/0000-0002-9292-8556
references:
- type: article
  title: 'SpotSweeper: Spot and artifact-level quality control for spatially-resolved
    transcriptomics data'
  authors:
  - name: MicTott
  year: '2024'
  journal: bioRxiv
  doi: 10.1101/TODO
  url: https://www.biorxiv.org/content/10.1101/TODO