Package: SpatialOmicsOverlay Title: Spatial Overlay for Omic Data from Nanostring GeoMx Data Description: Tools for NanoString Technologies GeoMx Technology. Package to easily graph on top of an OME-TIFF image. Plotting annotations can range from tissue segment to gene expression. Version: 1.13.0 Encoding: UTF-8 Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre","aut")), person("Megan", "Vandenberg", email = "mvandenberg@nanostring.com", role = c("ctb")), person("Stephanie", "Zimmerman", role = c("ctb"))) Depends: R (>= 4.1.0) Imports: S4Vectors, Biobase, base64enc, EBImage, ggplot2, XML, scattermore, dplyr, pbapply, data.table, readxl, magick, grDevices, stringr, plotrix, GeomxTools, BiocFileCache, stats, utils, methods, ggtext, tools, RBioFormats Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0), stringi, qpdf, pheatmap, viridis, cowplot, vdiffr, sf License: MIT Collate: addImage.R addPlottingFactor.R coordinateGeneration.R imageManipulation.R omeExtraction.R plottingBasics.R readSpatialOverlay.R removeSamples.R SpatialPosition-class.R SpatialOverlay-class.R utils.R xmlParsing.R biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport, Transcriptomics, Proteomics, ProprietaryPlatforms, RNASeq, Spatial, DataRepresentation, Visualization VignetteEngine: knitr::rmarkdown VignetteBuilder: knitr RoxygenNote: 7.3.1 Config/testthat/edition: 3 Config/pak/sysreqs: libcairo2-dev cmake libfftw3-dev libfontconfig1-dev libfreetype6-dev make libmagick++-dev gsfonts default-jdk libicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev libxml2-dev libssl-dev zlib1g-dev Repository: https://bioc.r-universe.dev Date/Publication: 2026-04-28 13:00:30 UTC RemoteUrl: https://github.com/bioc/SpatialOmicsOverlay RemoteRef: HEAD RemoteSha: 840708e9cbd9284fac0e436380998bae2832f144 NeedsCompilation: no Packaged: 2026-07-04 22:37:33 UTC; root Author: Maddy Griswold [cre, aut], Megan Vandenberg [ctb], Stephanie Zimmerman [ctb] Maintainer: Maddy Griswold