# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SpatialExperiment" in publications use:'
type: software
license: GPL-3.0-only
title: 'SpatialExperiment: S4 Class for Spatially Resolved -omics Data'
version: 1.15.1
doi: 10.1093/bioinformatics/btac299
abstract: Defines an S4 class for storing data from spatial -omics experiments. The
  class extends SingleCellExperiment to support storage and retrieval of additional
  information from spot-based and molecule-based platforms, including spatial coordinates,
  images, and image metadata. A specialized constructor function is included for data
  from the 10x Genomics Visium platform.
authors:
- family-names: Righelli
  given-names: Dario
  email: dario.righelli@gmail.com
- family-names: Risso
  given-names: Davide
  email: risso.davide@gmail.com
- family-names: Crowell
  given-names: Helena L.
  email: helena.crowell@uzh.ch
- family-names: Weber
  given-names: Lukas M.
  email: lukas.weber.edu@gmail.com
preferred-citation:
  type: article
  title: 'SpatialExperiment: infrastructure for spatially-resolved transcriptomics
    data in R using Bioconductor'
  authors:
  - family-names: Righelli
    given-names: Dario
    email: dario.righelli@gmail.com
  - family-names: Weber
    given-names: Lukas M.
    email: lukas.weber.edu@gmail.com
  - family-names: Crowell
    given-names: Helena L.
    email: helena.crowell@uzh.ch
  - family-names: Pardo
    given-names: Brenda
  - family-names: Collado-Torres
    given-names: Leonardo
  - family-names: Ghazanfar
    given-names: Shila
  - family-names: Lun
    given-names: Aaron T. L.
  - family-names: Hicks
    given-names: Stephanie C.
  - family-names: Risso
    given-names: Davide
    email: risso.davide@gmail.com
  journal: Bioinformatics
  year: '2022'
  volume: '38'
  issue: '11'
  doi: 10.1093/bioinformatics/btac299
  start: '-3'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/drighelli/SpatialExperiment
url: https://github.com/drighelli/SpatialExperiment
contact:
- family-names: Righelli
  given-names: Dario
  email: dario.righelli@gmail.com