Package: SpatialDecon
Title: Deconvolution of mixed cells from spatial and/or bulk gene
        expression data
Version: 1.23.0
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre", "aut")),
             person("Patrick", "Danaher", email = "pdanaher@nanostring.com", role = c("aut")))
Description: Using spatial or bulk gene expression data, estimates
        abundance of mixed cell types within each observation. Based on
        "Advances in mixed cell deconvolution enable quantification of
        cell types in spatial transcriptomic data", Danaher (2022).
        Designed for use with the NanoString GeoMx platform, but
        applicable to any gene expression data.
Depends: R (>= 4.0.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 7.2.3
Imports: grDevices, stats, utils, graphics, SeuratObject, Biobase,
        GeomxTools, repmis, methods, Matrix, logNormReg (>= 0.4)
Suggests: testthat, knitr, rmarkdown, qpdf, Seurat
biocViews: ImmunoOncology, FeatureExtraction, GeneExpression,
        Transcriptomics, Spatial
VignetteBuilder: knitr
BugReports: https://github.com/Nanostring-Biostats/SpatialDecon/issues
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libuv1-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:04 UTC
RemoteUrl: https://github.com/bioc/SpatialDecon
RemoteRef: HEAD
RemoteSha: 678ca0dec682d8a397c11cdb4fa21c1e6888b546
NeedsCompilation: no
Packaged: 2026-06-06 05:50:11 UTC; root
Author: Maddy Griswold [cre, aut],
  Patrick Danaher [aut]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>