Package: SpatialCPie
Title: Cluster analysis of Spatial Transcriptomics data
Version: 1.29.0
Authors@R: 
    person(
        "Joseph", "Bergenstraahle",
        email = "joseph.bergenstrahle@gmail.com",
        role = c("aut", "cre")
    )
Description: SpatialCPie is an R package designed to facilitate cluster
        evaluation for spatial transcriptomics data by providing
        intuitive visualizations that display the relationships between
        clusters in order to guide the user during cluster
        identification and other downstream applications. The package
        is built around a shiny "gadget" to allow the exploration of
        the data with multiple plots in parallel and an interactive UI.
        The user can easily toggle between different cluster
        resolutions in order to choose the most appropriate visual
        cues.
biocViews: Transcriptomics, Clustering, RNASeq, Software
Depends: R (>= 3.6)
Imports: colorspace (>= 1.3-2), data.table (>= 1.12.2), digest (>=
        0.6.21), dplyr (>= 0.7.6), ggforce (>= 0.3.0), ggiraph (>=
        0.5.0), ggplot2 (>= 3.0.0), ggrepel (>= 0.8.0), grid (>=
        3.5.1), igraph (>= 1.2.2), lpSolve (>= 5.6.13), methods (>=
        3.5.0), purrr (>= 0.2.5), readr (>= 1.1.1), rlang (>= 0.2.2),
        shiny (>= 1.1.0), shinycssloaders (>= 0.2.0), shinyjs (>= 1.0),
        shinyWidgets (>= 0.4.8), stats (>= 3.6.0), SummarizedExperiment
        (>= 1.10.1), tibble (>= 1.4.2), tidyr (>= 0.8.1), tidyselect
        (>= 0.2.4), tools (>= 3.6.0), utils (>= 3.5.0), zeallot (>=
        0.1.0)
Suggests: BiocStyle (>= 2.8.2), jpeg (>= 0.1-8), knitr (>= 1.20),
        rmarkdown (>= 1.10), testthat (>= 2.0.0)
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:49:18 UTC
RemoteUrl: https://github.com/bioc/SpatialCPie
RemoteRef: HEAD
RemoteSha: de961a4a55c1377597af11aad42c8cf7ba083d2c
NeedsCompilation: no
Packaged: 2026-07-04 01:23:52 UTC; root
Author: Joseph Bergenstraahle [aut, cre]
Maintainer: Joseph Bergenstraahle <joseph.bergenstrahle@gmail.com>