# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SpaNorm" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'SpaNorm: Spatially-aware normalisation for spatial transcriptomics data'
version: 1.1.0
doi: 10.1101/2024.05.31.596908
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SpaNorm
abstract: This package implements the spatially aware library size normalisation algorithm,
  SpaNorm. SpaNorm normalises out library size effects while retaining biology through
  the modelling of smooth functions for each effect. Normalisation is performed in
  a gene- and cell-/spot- specific manner, yielding library size adjusted data.
authors:
- family-names: Bhuva
  given-names: Dharmesh D.
  email: dharmesh.bhuva@adelaide.edu.au
  orcid: https://orcid.org/0000-0002-6398-9157
- family-names: Salim
  given-names: Agus
  email: salim.a@unimelb.edu.au
  orcid: https://orcid.org/0000-0003-3999-7701
- family-names: Mohamed
  given-names: Ahmed
  email: mohamed.a@wehi.edu.au
  orcid: https://orcid.org/0000-0001-6507-5300
preferred-citation:
  type: article
  title: 'SpaNorm: spatially-aware normalisation for spatial transcriptomics data'
  authors:
  - family-names: Salim
    given-names: Agus
    orcid: https://orcid.org/0000-0003-3999-7701
    email: salim.a@unimelb.edu.au
  - family-names: Bhuva
    given-names: Dharmesh D.
    orcid: https://orcid.org/0000-0002-6398-9157
    email: dharmesh.bhuva@adelaide.edu.au
  - family-names: Chen
    given-names: Carissa
  - family-names: Yang
    given-names: Pengyi
  - family-names: Davis
    given-names: Melissa J
  - family-names: Yang
    given-names: Jean YH
  journal: bioRxiv
  year: '2024'
  doi: 10.1101/2024.05.31.596908
  start: '2024'
  end: '05'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/bhuvad/SpaNorm
commit: 6bf7b580af7f2566b78c7768754d399122a2f501
url: https://bhuvad.github.io/SpaNorm
contact:
- family-names: Bhuva
  given-names: Dharmesh D.
  email: dharmesh.bhuva@adelaide.edu.au
  orcid: https://orcid.org/0000-0002-6398-9157