NEWS
SpaNorm 1.2.0
- Added model-based spatially variable gene (SVG) calling.
- Added spatial visualisation funciton
plotSpatial to visualise colData, gene expression, and reduced dimensions.
- Added spatial visualisation function
plotCovariate to visualise the biolgy, batch, and library size functions estimated by SpaNorm.
- Dynamic calculation of df.tps for rectangular tissue sections.
- Allow separate specification of df.tps for biology and library size.
- Added GLM-PCA approximation through the
SpaNormPCA function. The null model is considered to consist of the library size effects, batch effects, and the gene mean.
SpaNorm 1.0.0
- Initial Bioconductor submission.