Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.49.0
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Description: The SomaticSignatures package identifies mutational
        signatures of single nucleotide variants (SNVs).  It provides a
        infrastructure related to the methodology described in
        Nik-Zainal (2012, Cell), with flexibility in the matrix
        decomposition algorithms.
URL: https://github.com/juliangehring/SomaticSignatures
Imports: S4Vectors, IRanges, Seqinfo, Biostrings, ggplot2, ggbio,
        reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.5.0), VariantAnnotation, GenomicRanges, NMF
Suggests: testthat, knitr, parallel, GenomeInfoDb,
        BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations,
        ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        GenomicVariation, StatisticalMethod
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:38:37 UTC
RemoteUrl: https://github.com/bioc/SomaticSignatures
RemoteRef: HEAD
RemoteSha: 4a8c707c3cd99422a398e171ba2f258f958d8598
NeedsCompilation: no
Packaged: 2026-06-10 10:46:47 UTC; root