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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SingscoreAMLMutations" in publications use:'
type: software
license: Artistic-2.0
title: 'SingscoreAMLMutations: Using singscore to predict mutations in AML from transcriptomic
  signatures'
version: 1.29.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SingscoreAMLMutations
abstract: This workflow package shows how transcriptomic signatures can be used to
  infer phenotypes. The workflow begins by showing how the TCGA AML transcriptomic
  data can be downloaded and processed using the TCGAbiolinks packages. It then shows
  how samples can be scored using the singscore package and signatures from the MSigDB.
  Finally, the predictive capacity of scores in the context of predicting a specific
  mutation in AML is shown.The workflow exhibits the interplay of Bioconductor packages
  to achieve a gene-set level analysis.
authors:
- family-names: Bhuva
  given-names: Dharmesh D.
  email: bhuva.d@wehi.edu.au
  orcid: https://orcid.org/0000-0002-6398-9157
- family-names: Foroutan
  given-names: Momeneh
  email: foroutan.m@wehi.edu.au
  orcid: https://orcid.org/0000-0002-1440-0457
- family-names: Xie
  given-names: Yi
  email: xie.y@wehi.edu.au
  orcid: https://orcid.org/0000-0002-1938-4089
- family-names: Lyu
  given-names: Ruqian
  email: lyu.r@wehi.edu.au
- family-names: Kharbanda
  given-names: Malvika
  email: kharbanda.m@wehi.edu.au
  orcid: https://orcid.org/0000-0001-9726-3023
- family-names: Cursons
  given-names: Joseph
  email: cursons.j@wehi.edu.au
  orcid: https://orcid.org/0000-0002-5053-4540
- family-names: Davis
  given-names: Melissa J.
  email: davis.m@wehi.edu.au
  orcid: https://orcid.org/0000-0003-4864-7033
preferred-citation:
  type: article
  title: Using singscore to predict mutation status in acute myeloid leukemia from
    transcriptomic signatures
  authors:
  - family-names: Dharmesh D.
    given-names: Bhuva
  - family-names: Momeneh
    given-names: Foroutan
  - family-names: Yi
    given-names: Xie
  - family-names: Ruqian
    given-names: Lyu
  - family-names: Joseph
    given-names: Cursons
  - family-names: Melissa J.
    given-names: Davis
  journal: F1000Research
  year: '2019'
  volume: '8'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/DavisLaboratory/SingscoreAMLMutations
commit: 933e8dab832779fa56b129b43399f4105fb43b40
url: https://github.com/DavisLaboratory/SingscoreAMLMutations
date-released: '2026-04-28'
contact:
- family-names: Bhuva
  given-names: Dharmesh D.
  email: bhuva.d@wehi.edu.au
  orcid: https://orcid.org/0000-0002-6398-9157