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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SingleR" in publications use:'
type: software
license: GPL-3.0-only
title: 'SingleR: Reference-Based Single-Cell RNA-Seq Annotation'
version: 2.7.1
doi: 10.1038/s41590-018-0276-y
abstract: Performs unbiased cell type recognition from single-cell RNA sequencing
  data, by leveraging reference transcriptomic datasets of pure cell types to infer
  the cell of origin of each single cell independently.
authors:
- family-names: Aran
  given-names: Dvir
  email: dvir.aran@ucsf.edu
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com
preferred-citation:
  type: article
  title: Reference-based analysis of lung single-cell sequencing reveals a transitional
    profibrotic macrophage
  authors:
  - family-names: Aran
    given-names: Dvir
    email: dvir.aran@ucsf.edu
  - family-names: Looney
    given-names: Agnieszka P.
  - family-names: Liu
    given-names: Leqian
  - family-names: Wu
    given-names: Esther
  - family-names: Fong
    given-names: Valerie
  - family-names: Hsu
    given-names: Austin
  - family-names: Chak
    given-names: Suzanna
  - family-names: Naikawadi
    given-names: Ram P.
  - family-names: Wolters
    given-names: Paul J.
  - family-names: Abate
    given-names: Adam R.
  - family-names: Butte
    given-names: Atul J.
  - family-names: Bhattacharya
    given-names: Mallar
  journal: Nat. Immunol.
  year: '2019'
  volume: '20'
  doi: 10.1038/s41590-018-0276-y
  start: 163-172
repository: https://bioc.r-universe.dev
repository-code: https://github.com/LTLA/SingleR
url: https://support.bioconductor.org/
date-released: '2024-05-22'
contact:
- family-names: Lun
  given-names: Aaron
  email: infinite.monkeys.with.keyboards@gmail.com