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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SingleMoleculeFootprinting" in publications use:'
type: software
license: GPL-3.0-only
title: 'SingleMoleculeFootprinting: Analysis tools for Single Molecule Footprinting
  (SMF) data'
version: 1.13.0
doi: 10.32614/CRAN.package.SingleMoleculeFootprinting
abstract: SingleMoleculeFootprinting is an R package providing functions to analyze
  Single Molecule Footprinting (SMF) data. Following the workflow exemplified in its
  vignette, the user will be able to perform basic data analysis of SMF data with
  minimal coding effort. Starting from an aligned bam file, we show how to perform
  quality controls over sequencing libraries, extract methylation information at the
  single molecule level accounting for the two possible kind of SMF experiments (single
  enzyme or double enzyme), classify single molecules based on their patterns of molecular
  occupancy, plot SMF information at a given genomic location
authors:
- family-names: Barzaghi
  given-names: Guido
  email: guido.barzaghi@embl.de
  orcid: https://orcid.org/0000-0001-6066-3920
- family-names: Krebs
  given-names: Arnaud
  email: arnaud.krebs@embl.de
  orcid: https://orcid.org/0000-0001-7999-6127
repository: https://bioc.r-universe.dev
repository-code: https://github.com/Krebslabrep/SingleMoleculeFootprinting
commit: 25363ebb2fadd4fd1b175dde78a76aaeb5b324ac
url: https://github.com/Krebslabrep/SingleMoleculeFootprinting
contact:
- family-names: Barzaghi
  given-names: Guido
  email: guido.barzaghi@embl.de
  orcid: https://orcid.org/0000-0001-6066-3920