Package: SingleCellExperiment
Version: 1.35.2
Date: 2026-07-16
Title: S4 Classes for Single Cell Data
Authors@R: c(
        person("Aaron", "Lun", role=c("aut", "cph"), email="infinite.monkeys.with.keyboards@gmail.com"),
        person("Davide","Risso", role=c("aut","cre", "cph"), email="risso.davide@gmail.com"),
        person("Keegan", "Korthauer", role="ctb"),
        person("Kevin", "Rue-Albrecht", role="ctb"),
        person("Luke", "Zappia", role = "ctb", comment = c(ORCID = "0000-0001-7744-8565", github = "lazappi")))
Depends: SummarizedExperiment
Imports: methods, utils, stats, S4Vectors, BiocGenerics, GenomicRanges,
        DelayedArray
Suggests: testthat, BiocStyle, knitr, rmarkdown, Matrix, scRNAseq (>=
        2.9.1), Rtsne
biocViews: ImmunoOncology, DataRepresentation, DataImport,
        Infrastructure, SingleCell
Description: Defines a S4 class for storing data from single-cell
        experiments. This includes specialized methods to store and
        retrieve spike-in information, dimensionality reduction
        coordinates and size factors for each cell, along with the
        usual metadata for genes and libraries.
License: GPL-2 | GPL-3
URL: https://github.com/drisso/SingleCellExperiment
BugReports: https://github.com/drisso/SingleCellExperiment/issues
VignetteBuilder: knitr
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-16 03:24:10 UTC
RemoteUrl: https://github.com/bioc/SingleCellExperiment
RemoteRef: HEAD
RemoteSha: f130bb012bcfcb7aa4e277f528753b55cfef0878
NeedsCompilation: no
Packaged: 2026-10-30 21:50:47 UTC; root
Author: Aaron Lun [aut, cph],
  Davide Risso [aut, cre, cph],
  Keegan Korthauer [ctb],
  Kevin Rue-Albrecht [ctb],
  Luke Zappia [ctb] (ORCID: <https://orcid.org/0000-0001-7744-8565>,
    github: lazappi)
Maintainer: Davide Risso <risso.davide@gmail.com>