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cff-version: 1.2.0
message: 'To cite package "SingleCellAlleleExperiment" in publications use:'
type: software
license: MIT
title: 'SingleCellAlleleExperiment: S4 Class for Single Cell Data with Allele and
  Functional Levels for Immune Genes'
version: 1.1.0
doi: 10.32614/CRAN.package.SingleCellAlleleExperiment
abstract: Defines a S4 class that is based on SingleCellExperiment. In addition to
  the usual gene layer the object can also store data for immune genes such as HLAs,
  Igs and KIRs at allele and functional level. The package is part of a workflow named
  single-cell ImmunoGenomic Diversity (scIGD), that firstly incorporates allele-aware
  quantification data for immune genes. This new data can then be used with the here
  implemented data structure and functionalities for further data handling and data
  analysis.
authors:
- family-names: Schuck
  given-names: Jonas
  email: jschuckdev@gmail.com
  orcid: https://orcid.org/0009-0003-5705-4579
- family-names: Al Ajami
  given-names: Ahmad
  orcid: https://orcid.org/0009-0006-5615-7447
- family-names: Marini
  given-names: Federico
  orcid: https://orcid.org/0000-0003-3252-7758
- family-names: Imkeller
  given-names: Katharina
  orcid: https://orcid.org/0000-0002-5177-0852
repository: https://bioc.r-universe.dev
repository-code: https://github.com/AGImkeller/SingleCellAlleleExperiment
commit: 23e0f9ffcfe113525f15c8ffbc21b41fe60882dd
url: https://github.com/AGImkeller/SingleCellAlleleExperiment
contact:
- family-names: Schuck
  given-names: Jonas
  email: jschuckdev@gmail.com
  orcid: https://orcid.org/0009-0003-5705-4579