Package: Single.mTEC.Transcriptomes
Type: Package
Title: Single Cell Transcriptome Data and Analysis of Mouse mTEC cells
Version: 1.41.1
Date: 2025-07-28
Author: Alejandro Reyes
Maintainer: Alejandro Reyes <alejandro.reyes.ds@gmail.com>
Description: This data package contains the code used to analyse the
        single-cell RNA-seq and the bulk ATAC-seq data from the
        manuscript titled: Single-cell transcriptome analysis reveals
        coordinated ectopic-gene expression patterns in medullary
        thymic epithelial cells. This paper was published in Nature
        Immunology 16,933-941(2015). The data objects provided in this
        package has been pre-processed: the raw data files can be
        downloaded from ArrayExpress under the accession identifiers
        E-MTAB-3346 and E-MTAB-3624. The vignette of this data package
        provides a documented and reproducible workflow that includes
        the code that was used to generate each statistic and figure
        from the manuscript.
License: LGPL
biocViews: ExperimentData
VignetteBuilder: knitr
Depends: R (>= 3.5.0)
Suggests: DESeq2, GenomicRanges, GenomicFeatures, genefilter, statmod,
        gdata, RColorBrewer, ggplot2, gplots, cluster, clue, grid,
        gridExtra, ggbio, Gviz, geneplotter, matrixStats, pheatmap,
        BiocStyle, knitr, BiocParallel
RoxygenNote: 5.0.1
NeedsCompilation: no
PackageStatus: Deprecated
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-14 15:24:58 UTC
RemoteUrl:
        https://git.bioconductor.org/packages/Single.mTEC.Transcriptomes
RemoteRef: HEAD
RemoteSha: ca9a870091cc24f01a5b19438f64714cc926d5a5
Packaged: 2026-11-09 10:17:54 UTC; root