NEWS
SimBu 1.5.3 (2023-11-21)
- Added 'seed' parameter to simulation
SimBu 1.5.2 (2023-11-08)
- Updated SimBu to be compatibel with Seurat v5
SimBu 1.1.2 (2023-01-12)
- Bugfix in the dataset_seurat function, where custom names for the parameters 'cell_id_col' and 'cell_type_col' did not work (thanks to @orange-whale for bringing this up)
- Changed default 'remove_bias_in_counts' parameter of function 'simulate_bulk' to FALSE after discussion with @ZheFrench
SimBu 1.1.1 (2022-11-02)
- Bugfix in mirror_db scenario, where cell type fractions were not correctly annotated in the cell_fraction output (thanks to @arielah for helping out here)
SimBu 1.0.0 (2022-11-01)
- SimBu was released on Bioconductor 3.16
SimBu 0.99.10 (2022-07-07)
- Added long tests to test the download of sfaira datasets
SimBu 0.99.7 (2022-06-01)
- Added functionality to check Sfaira datasets for accessibility (if the specified URLs can be downloaded)
- Added list of Sfaira IDs, which are currently not downloadable
SimBu 0.99.0 (2022-04-21)
- Use 'basilisk' to solve conda environment and Sfaira dependencies
- SimBu has been submitted to Bioconductor
SimBu 0.1.0 (2021-05-15)