Package: SiPSiC
Type: Package
Title: Calculate Pathway Scores for Each Cell in scRNA-Seq Data
Version: 1.13.0
Date: 2022-12-29
Authors@R: c(person("Daniel", "Davis", role = c("aut", "cre"), email="DanielDavis000@gmail.com", comment=c(ORCID="0000-0001-7863-1521")),
		 person("Yotam", "Drier", role = "aut"))
Description: Infer biological pathway activity of cells from
        single-cell RNA-sequencing data by calculating a pathway score
        for each cell (pathway genes are specified by the user). It is
        recommended to have the data in Transcripts-Per-Million (TPM)
        or Counts-Per-Million (CPM) units for best results. Scores may
        change when adding cells to or removing cells off the data.
        SiPSiC stands for Single Pathway analysis in Single Cells.
License: file LICENSE
URL: https://www.genome.org/cgi/doi/10.1101/gr.278431.123
biocViews: Software, DifferentialExpression, GeneSetEnrichment,
        BiomedicalInformatics, CellBiology, Transcriptomics, RNASeq,
        SingleCell, Transcription, Sequencing, ImmunoOncology,
        DataImport
Depends: Matrix, SingleCellExperiment
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
BugReports: https://github.com/DanielDavis12/SiPSiC/issues
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:00:29 UTC
RemoteUrl: https://github.com/bioc/SiPSiC
RemoteRef: HEAD
RemoteSha: ee7c0723f877c7e4fdc58b6b2297b549142e0e86
NeedsCompilation: no
Packaged: 2026-06-21 09:19:10 UTC; root
Author: Daniel Davis [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7863-1521>),
  Yotam Drier [aut]
Maintainer: Daniel Davis <DanielDavis000@gmail.com>