Package: SeqGate
Type: Package
Title: Filtering of Lowly Expressed Features
Version: 1.23.0
Date: 2021-01-22
Authors@R: c(
    person("Christelle", "Reynès", email ="christelle.reynes@igf.cnrs.fr", role = c("aut")),
    person("Stéphanie", "Rialle", email = "stephanie.rialle@mgx.cnrs.fr", role = c("aut","cre")))
Description: Filtering of lowly expressed features (e.g. genes) is a
        common step before performing statistical analysis, but an
        arbitrary threshold is generally chosen. SeqGate implements a
        method that rationalize this step by the analysis of the
        distibution of counts in replicate samples. The gate is the
        threshold above which sequenced features can be considered as
        confidently quantified.
Encoding: UTF-8
Imports: stats, methods, BiocManager
Depends: S4Vectors, SummarizedExperiment, GenomicRanges
Suggests: testthat (>= 3.0.0), edgeR, BiocStyle, knitr, rmarkdown
License: GPL (>= 2.0)
LazyData: no
biocViews: DifferentialExpression, GeneExpression, Transcriptomics,
        Sequencing, RNASeq
BugReports: https://github.com/srialle/SeqGate/issues
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:53:47 UTC
RemoteUrl: https://github.com/bioc/SeqGate
RemoteRef: HEAD
RemoteSha: 4449ab3582234dba01dd8bcb69faee73364fdaa1
NeedsCompilation: no
Packaged: 2026-05-31 06:17:47 UTC; root
Author: Christelle Reynès [aut],
  Stéphanie Rialle [aut, cre]
Maintainer: Stéphanie Rialle <stephanie.rialle@mgx.cnrs.fr>