# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SeqArray" in publications use:'
type: software
license: GPL-3.0-only
title: 'SeqArray: Data Management of Large-Scale Whole-Genome Sequence Variant Calls'
version: 1.45.4
doi: 10.1093/bioinformatics/btx145
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SeqArray
abstract: 'Data management of large-scale whole-genome sequencing variant calls with
  thousands of individuals: genotypic data (e.g., SNVs, indels and structural variation
  calls) and annotations in SeqArray GDS files are stored in an array-oriented and
  compressed manner, with efficient data access using the R programming language.'
authors:
- family-names: Zheng
  given-names: Xiuwen
  email: zhengx@u.washington.edu
  orcid: https://orcid.org/0000-0002-1390-0708
- family-names: Gogarten
  given-names: Stephanie
  email: sdmorris@uw.edu
preferred-citation:
  type: article
  title: SeqArray -- A storage-efficient high-performance data format for WGS variant
    calls
  authors:
  - family-names: Zheng
    given-names: Xiuwen
    email: zhengx@u.washington.edu
    orcid: https://orcid.org/0000-0002-1390-0708
  - family-names: Gogarten
    given-names: Stephanie
    email: sdmorris@uw.edu
  - family-names: Lawrence
    given-names: Michael
  - family-names: Stilp
    given-names: Adrienne
  - family-names: Conomos
    given-names: Matthew
  - family-names: Weir
    given-names: Bruce
  - family-names: Laurie
    given-names: Cathy
  - family-names: Levine
    given-names: David
  journal: Bioinformatics
  year: '2017'
  doi: 10.1093/bioinformatics/btx145
  volume: '33'
  issue: '15'
  start: 2251-2257
repository: https://bioc.r-universe.dev
repository-code: https://github.com/zhengxwen/SeqArray
commit: 8c57d5dec826c38435e8095774da4ce9f9463b74
url: https://github.com/zhengxwen/SeqArray
date-released: '2024-09-29'
contact:
- family-names: Zheng
  given-names: Xiuwen
  email: zhengx@u.washington.edu
  orcid: https://orcid.org/0000-0002-1390-0708
references:
- type: article
  title: A High-performance Computing Toolset for Relatedness and Principal Component
    Analysis of SNP Data
  authors:
  - family-names: Zheng
    given-names: Xiuwen
  - family-names: Levine
    given-names: David
  - family-names: Shen
    given-names: Jess
  - family-names: Gogarten
    given-names: Stephanie
  - family-names: Laurie
    given-names: Cathy
  - family-names: Weir
    given-names: Bruce
  journal: Bioinformatics
  year: '2012'
  doi: 10.1093/bioinformatics/bts606
  volume: '28'
  issue: '24'
  start: 3326-3328