Package: SeqArray
Type: Package
Title: Data management of large-scale whole-genome sequence variant
        calls using GDS files
Version: 1.53.1
Date: 2026-05-23
Depends: R (>= 3.5.0), gdsfmt (>= 1.31.1)
Imports: methods, parallel, digest, S4Vectors, IRanges, GenomicRanges,
        Seqinfo, Biostrings
LinkingTo: gdsfmt
Suggests: Biobase, BiocGenerics, BiocParallel, RUnit, Rcpp, SNPRelate,
        crayon, knitr, markdown, rmarkdown, Rsamtools,
        VariantAnnotation
Authors@R: c(person("Xiuwen", "Zheng", role=c("aut", "cre"),
        email="zhengx@u.washington.edu", comment=c(ORCID="0000-0002-1390-0708")),
        person("Stephanie", "Gogarten", role="aut", email="sdmorris@uw.edu"),
        person("David", "Levine", role="ctb"),
        person("Cathy", "Laurie", role="ctb"))
Description: Data management of large-scale whole-genome sequencing
        variant calls with thousands of individuals: genotypic data
        (e.g., SNVs, indels and structural variation calls) and
        annotations in SeqArray GDS files are stored in an
        array-oriented and compressed manner, with efficient data
        access using the R programming language.
License: GPL-3
VignetteBuilder: knitr
ByteCompile: TRUE
LazyData: true
URL: https://github.com/zhengxwen/SeqArray
BugReports: https://github.com/zhengxwen/SeqArray/issues
biocViews: Infrastructure, DataRepresentation, Sequencing, Genetics
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-23 06:40:12 UTC
RemoteUrl: https://github.com/bioc/SeqArray
RemoteRef: HEAD
RemoteSha: 6c3f9b6562855878e092452689f5aaf616add5a7
NeedsCompilation: yes
Packaged: 2026-06-23 15:34:05 UTC; root
Author: Xiuwen Zheng [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1390-0708>),
  Stephanie Gogarten [aut],
  David Levine [ctb],
  Cathy Laurie [ctb]
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>