Package: Sconify
Type: Package
Title: A toolkit for performing KNN-based statistics for flow and mass
        cytometry data
biocViews: ImmunoOncology, SingleCell, FlowCytometry, Software,
        MultipleComparison, Visualization
Version: 1.33.0
Author: Tyler J Burns
Maintainer: Tyler J Burns <burns.tyler@gmail.com>
Description: This package does k-nearest neighbor based statistics and
        visualizations with flow and mass cytometery data. This gives
        tSNE maps"fold change" functionality and provides a data
        quality metric by assessing manifold overlap between fcs files
        expected to be the same. Other applications using this package
        include imputation, marker redundancy, and testing the relative
        information loss of lower dimension embeddings compared to the
        original manifold.
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5)
Imports: tibble, dplyr, FNN, flowCore, Rtsne, ggplot2, magrittr, utils,
        stats, readr
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
Collate: 'k.selection.R' 'process.files.R' 'knn.and.statistics.R'
        'post.processing.R' 'data.R'
Config/pak/sysreqs: libssl-dev libx11-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:47:32 UTC
RemoteUrl: https://github.com/bioc/Sconify
RemoteRef: HEAD
RemoteSha: d735376523986cb10b52070c3cf6347943819a0a
NeedsCompilation: no
Packaged: 2026-07-12 05:44:43 UTC; root