# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SVMDO" in publications use:'
type: software
license: GPL-3.0-only
title: 'SVMDO: Identification of Tumor-Discriminating mRNA Signatures via Support
  Vector Machines Supported by Disease Ontology'
version: 1.5.5
doi: 10.55730/1300-0152.2670
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SVMDO
abstract: It is an easy-to-use GUI using disease information for detecting tumor/normal
  sample discriminating gene sets from differentially expressed genes. Our approach
  is based on an iterative algorithm filtering genes with disease ontology enrichment
  analysis and wilk and wilks lambda criterion connected to SVM classification model
  construction. Along with gene set extraction, SVMDO also provides individual prognostic
  marker detection. The algorithm is designed for FPKM and RPKM normalized RNA-Seq
  transcriptome datasets.
authors:
- family-names: Ozer
  given-names: Mustafa Erhan
  email: erhanozer19@marun.edu.tr
  orcid: https://orcid.org/0000-0002-1572-8008
- family-names: Ozbek Sarica
  given-names: Pemra
  email: pemra.ozbek@marmara.edu.tr
- family-names: Arga
  given-names: Kazim Yalcin
  email: kazim.arga@marmara.edu.tr
preferred-citation:
  type: article
  title: 'SVM-DO: identification of tumor-discriminating mRNA signatures via support
    vector machines supported by Disease Ontology'
  authors:
  - family-names: Ozer
    given-names: Mustafa Erhan
    email: erhanozer19@marun.edu.tr
    orcid: https://orcid.org/0000-0002-1572-8008
  - family-names: Sarica
    given-names: Pemra Ozbek
  - family-names: Arga
    given-names: Kazim Yalcin
    email: kazim.arga@marmara.edu.tr
  year: '2023'
  journal: Turkish Journal of Biology
  volume: '47'
  doi: 10.55730/1300-0152.2670
  notes: Special Issue
  start: 349-365
repository: https://bioc.r-universe.dev
repository-code: https://github.com/robogeno/SVMDO
commit: a10cc82cf4c6cc413935325f6d091d3f44a3fccc
url: https://github.com/robogeno/SVMDO
date-released: '2024-08-30'
contact:
- family-names: Ozer
  given-names: Mustafa Erhan
  email: erhanozer19@marun.edu.tr
  orcid: https://orcid.org/0000-0002-1572-8008