Package: SPLINTER
Type: Package
Title: Splice Interpreter of Transcripts
Version: 1.39.0
Date: 2025-07-24
Authors@R: person("Diana", "Low",  email = "lowdiana@gmail.com",
        role = c("aut", "cre"))
URL: https://github.com/dianalow/SPLINTER/
BugReports: https://github.com/dianalow/SPLINTER/issues
Description: Provides tools to analyze alternative splicing sites,
        interpret outcomes based on sequence information, select and
        design primers for site validiation and give visual
        representation of the event to guide downstream experiments.
License: GPL-2
LazyData: TRUE
Depends: R (>= 3.6.0), grDevices, stats
Imports: graphics, ggplot2, seqLogo, Biostrings, pwalign, biomaRt,
        GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz,
        IRanges, S4Vectors, Seqinfo, utils, plyr,stringr, methods,
        BSgenome.Mmusculus.UCSC.mm9, googleVis
biocViews: ImmunoOncology, GeneExpression, RNASeq, Visualization,
        AlternativeSplicing
Collate: primerpcr.R main_splinter.R
Encoding: UTF-8
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Suggests: txdbmaker, BiocStyle, knitr, rmarkdown
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev libjpeg-dev
        liblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:44:19 UTC
RemoteUrl: https://github.com/bioc/SPLINTER
RemoteRef: HEAD
RemoteSha: 4ccff103f8700d557eef9a0b4aa1d8e357b2b12f
NeedsCompilation: no
Packaged: 2026-07-18 04:50:29 UTC; root
Author: Diana Low [aut, cre]
Maintainer: Diana Low <lowdiana@gmail.com>