o Updated README file with new example of heatmap plot.
o Updated spicey_plot.R: the spicey_heatmap() function no longer computes z-scores from SPICEY values; it now directly visualizes the original SPICEY scores. o Updated the vignette accordingly to remove all references and calculations related to z-scores.
o Minor update: modified one line in the internal plot_heatmap() function to adjust the color gradient for visualization purposes.
o Minor update: Fix the doi issue for citation.
o Updated R dependency (R ≥ 4.5) o Added unit tests for main functions following Bioconductor guidelines. o Added fnd role in Authors@R (FPI fellowship acknowledgment). o Verified all :: usages; kept for clarity with proper Imports: tracking. o Refactored redundant code into helper functions (.standardize_peaks, .add_tss_annotation); streamlined heatmap logic. o Added package man page. o Updated vignette: removed GitHub installation, added Bioconductor installation via BiocManager. o Fixed minor typo in specificity_index.Rd.
o First public release of SPICEY.
o Added a NEWS.md file to track changes to the package.