Trigos A, Feng Y, Yang T, Li M, Zhu J, Ozcoban V, Doyle M (2026). SPIAT: Spatial Image Analysis of Cells in Tissues. R package version 1.13.1, https://trigosteam.github.io/SPIAT/.

Feng Y, Yang T, Zhu J, Li M, Doyle M, Ozcoban V, Bass G, Pizzolla A, Cain L, Weng S, Pasam A, Kocovski N, Huang Y, Keam S, Speed T, Neeson P, Pearson R, Sandhu S, Goode D, Trigos A (2023). “Spatial analysis with SPIAT and spaSim to characterize and simulate tissue microenvironments.” Nature Communications, 14(2697). doi:10.1038/s41467-023-37822-0.

Corresponding BibTeX entries:

  @Manual{,
    title = {SPIAT: Spatial Image Analysis of Cells in Tissues},
    author = {Anna S Trigos and Yuzhou Feng and Tianpei Yang and Mabel
      Li and John Zhu and Volkan Ozcoban and Maria Doyle},
    note = {R package version 1.13.1},
    year = {2026},
    url = {https://trigosteam.github.io/SPIAT/},
  }

  @Article{,
    title = {Spatial analysis with SPIAT and spaSim to characterize and
      simulate tissue microenvironments},
    author = {Yuzhou Feng and Tianpei Yang and John Zhu and Mabel Li
      and Maria Doyle and Volkan Ozcoban and Greg T Bass and Angela
      Pizzolla and Lachlan Cain and Sirui Weng and Anupama Pasam and
      Nikolce Kocovski and Yu-Kuan Huang and Simon P Keam and Terence P
      Speed and Paul J Neeson and Richard B Pearson and Shahneen K
      Sandhu and David L Goode and Anna S Trigos},
    journal = {Nature Communications},
    volume = {14},
    number = {2697},
    year = {2023},
    doi = {10.1038/s41467-023-37822-0},
  }