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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SOMNiBUS" in publications use:'
type: software
license: MIT
title: 'SOMNiBUS: Smooth modeling of bisulfite sequencing'
version: 1.13.0
doi: 10.1111/biom.13307
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SOMNiBUS
abstract: This package aims to analyse count-based methylation data on predefined
  genomic regions, such as those obtained by targeted sequencing, and thus to identify
  differentially methylated regions (DMRs) that are associated with phenotypes or
  traits. The method is built a rich flexible model that allows for the effects, on
  the methylation levels, of multiple covariates to vary smoothly along genomic regions.
  At the same time, this method also allows for sequencing errors and can adjust for
  variability in cell type mixture.
authors:
- family-names: Zhao
  given-names: Kaiqiong
  email: kaiqiong.zhao@mail.mcgill.ca
- family-names: Klein
  given-names: Kathleen
  email: kathleen.klein@mail.mcgill.ca
- family-names: Greenwood
  given-names: Celia
  email: celia.greenwood@mcgill.ca
preferred-citation:
  type: article
  title: A novel statistical method for modeling covariate effects in bisulfite sequencing
    derived measures of DNA methylation
  authors:
  - family-names: Zhao
    given-names: Kaiqiong
    email: kaiqiong.zhao@mail.mcgill.ca
  - family-names: Oualkacha
    given-names: Karim
  - family-names: Lakhal‐Chaieb
    given-names: Lajmi
  - family-names: Labbe
    given-names: Aurélie
  - family-names: Klein
    given-names: Kathleen
    email: kathleen.klein@mail.mcgill.ca
  - family-names: Ciampi
    given-names: Antonio
  - family-names: Hudson
    given-names: Marie
  - family-names: Colmegna
    given-names: Inés
  - family-names: Pastinen
    given-names: Tomi
  - family-names: Zhang
    given-names: Tieyuan
  - family-names: Daley
    given-names: Denise
  - family-names: Greenwood
    given-names: Celia M.T.
  journal: Journal of the International Biometric Society
  year: '2020'
  doi: 10.1111/biom.13307
repository: https://bioc.r-universe.dev
repository-code: https://github.com/kaiqiong/SOMNiBUS
commit: ad81567efc246148e820bfb6bcdf313574a5fb29
url: https://github.com/kaiqiong/SOMNiBUS
contact:
- family-names: Klein
  given-names: Kathleen
  email: kathleen.klein@mail.mcgill.ca