Package: SEtools
Type: Package
Title: SEtools: tools for working with SummarizedExperiment
Version: 1.27.0
Depends: R (>= 4.0), SummarizedExperiment, sechm
Authors@R: person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218"))
Description: This includes a set of convenience functions for working
        with the SummarizedExperiment class. Note that plotting
        functions historically in this package have been moved to the
        sechm package (see vignette for details).
Imports: BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR,
        openxlsx, pheatmap, stats, circlize, methods, sva
Suggests: BiocStyle, knitr, rmarkdown, ggplot2
biocViews: GeneExpression
VignetteBuilder: knitr
License: GPL
Encoding: UTF-8
RoxygenNote: 7.3.2
BugReports: https://github.com/plger/SEtools
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev perl
        libnode-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:54 UTC
RemoteUrl: https://github.com/bioc/SEtools
RemoteRef: HEAD
RemoteSha: 67898208e54f2d58b682dd58d6f64fee3a025670
NeedsCompilation: no
Packaged: 2026-07-04 22:34:20 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>)
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>