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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SEraster" in publications use:'
type: software
license: GPL-3.0-only
title: 'SEraster: Rasterization Preprocessing Framework for Scalable Spatial Omics
  Data Analysis'
version: 1.5.0
doi: 10.1093/bioinformatics/btae412
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SEraster
abstract: SEraster is a rasterization preprocessing framework that aggregates cellular
  information into spatial pixels to reduce resource requirements for spatial omics
  data analysis. SEraster reduces the number of spatial points in spatial omics datasets
  for downstream analysis through a process of rasterization where single cells’ gene
  expression or cell-type labels are aggregated into equally sized pixels based on
  a user-defined resolution. SEraster is built on an R/Bioconductor S4 class called
  SpatialExperiment. SEraster can be incorporated with other packages to conduct downstream
  analyses for spatial omics datasets, such as detecting spatially variable genes.
authors:
- family-names: Aihara
  given-names: Gohta
  email: gohta.aihara@gmail.com
  orcid: https://orcid.org/0000-0002-2492-9610
- family-names: Chen
  given-names: Mayling
  email: mchen161@jhu.edu
  orcid: https://orcid.org/0009-0009-0961-6665
- family-names: Atta
  given-names: Lyla
  email: lylaatta@jhmi.edu
  orcid: https://orcid.org/0000-0002-6113-0082
- family-names: Fan
  given-names: Jean
  email: jeanfan@jhu.edu
  orcid: https://orcid.org/0000-0002-0212-5451
preferred-citation:
  type: article
  title: 'SEraster: a rasterization preprocessing framework for scalable spatial omics
    data analysis'
  authors:
  - family-names: Aihara
    given-names: Gohta
    email: gohta.aihara@gmail.com
    orcid: https://orcid.org/0000-0002-2492-9610
  - family-names: Clifton
    given-names: Kalen
  - family-names: Chen
    given-names: Mayling
    email: mchen161@jhu.edu
    orcid: https://orcid.org/0009-0009-0961-6665
  - family-names: Li
    given-names: Zhuoyan
  - family-names: Atta
    given-names: Lyla
    email: lylaatta@jhmi.edu
    orcid: https://orcid.org/0000-0002-6113-0082
  - family-names: Miller
    given-names: Brendan F
  - family-names: Satija
    given-names: Rahul
  - family-names: Hickey
    given-names: John W
  - family-names: Fan
    given-names: Jean
    email: jeanfan@jhu.edu
    orcid: https://orcid.org/0000-0002-0212-5451
  journal: Bioinformatics
  volume: '40'
  issue: '7'
  year: '2024'
  doi: 10.1093/bioinformatics/btae412
repository: https://bioc.r-universe.dev
repository-code: https://github.com/JEFworks-Lab/SEraster
commit: 5e2b20c258b148aa478d01514338988d01ecfa13
url: https://github.com/JEFworks-Lab/SEraster
date-released: '2026-04-28'
contact:
- family-names: Aihara
  given-names: Gohta
  email: gohta.aihara@gmail.com
  orcid: https://orcid.org/0000-0002-2492-9610