To cite SAIGEgds in publications use:

Zheng X, Davis J.Wade. SAIGEgds -- an efficient statistical tool for large-scale PheWAS with mixed models. Bioinformatics 2021.<doi:10.1093/bioinformatics/btaa731>

Zhou W, Nielsen JB, Fritsche LG, Dey R, Gabrielsen ME, Wolford BN, LeFaive J, VandeHaar P, Gagliano SA, Gifford A, Bastarache LA, Wei WQ, Denny JC, Lin M, Hveem K, Kang HM, Abecasis GR, Willer CJ, Lee S. Efficiently controlling for case-control imbalance and sample relatedness in large-scale genetic association studies. Nature Genetics 2018. Sep;50(9):1335-1341.<doi:10.1038/s41588-018-0184-y>

Xiuwen Zheng, Stephanie M. Gogarten, Michael Lawrence, Adrienne Stilp, Matthew P. Conomos, Bruce S. Weir, Cathy Laurie, David Levine. SeqArray -- A storage-efficient high-performance data format for WGS variant calls. Bioinformatics 2017;<doi:10.1093/bioinformatics/btx145>

Corresponding BibTeX entries:

  @Misc{,
    title = {SAIGEgds -- an efficient statistical tool for large-scale
      PheWAS with mixed models},
    author = {Xiuwen Zheng and J. Wade Davis},
    journal = {Bioinformatics},
    year = {2021},
    doi = {10.1093/bioinformatics/btaa731},
  }

  @Article{,
    title = {Efficiently controlling for case-control imbalance and
      sample relatedness in large-scale genetic association studies},
    author = {Wei Zhou and Jonas B. Nielsen and Lars G. Fritsche and
      Rounak Dey and Maiken E. Gabrielsen and Brooke N. Wolford and
      Jonathon LeFaive and Peter VandeHaar and Sarah A. Gagliano and
      Aliya Gifford and Lisa A. Bastarache and Wei-Qi Wei and Joshua C.
      Denny and Maoxuan Lin and Kristian Hveem and Hyun Min Kang and
      Goncalo R. Abecasis and Cristen J. Willer and Seunggeun Lee},
    journal = {Nature Genetics},
    year = {2018},
    doi = {10.1038/s41588-018-0184-y},
  }

  @Article{,
    title = {SeqArray -- A storage-efficient high-performance data
      format for WGS variant calls},
    author = {Xiuwen Zheng and Stephanie Gogarten and Michael Lawrence
      and Adrienne Stilp and Matthew Conomos and Bruce Weir and Cathy
      Laurie and David Levine},
    journal = {Bioinformatics},
    year = {2017},
    doi = {10.1093/bioinformatics/btx145},
  }