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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Rsubread" in publications use:'
type: software
title: 'Rsubread: Mapping, quantification and variant analysis of sequencing data'
version: 2.19.1
doi: 10.1093/nar/gkz114
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Rsubread
abstract: Alignment, quantification and analysis of RNA sequencing data (including
  both bulk RNA-seq and scRNA-seq) and DNA sequenicng data (including ATAC-seq, ChIP-seq,
  WGS, WES etc). Includes functionality for read mapping, read counting, SNP calling,
  structural variant detection and gene fusion discovery. Can be applied to all major
  sequencing techologies and to both short and long sequence reads.
authors:
- family-names: Shi
  given-names: Wei
  email: wei.shi@onjcri.org.au
- family-names: Liao
  given-names: Yang
  email: yang.liao@onjcri.org.au
- family-names: Dai
  given-names: Gordon K Smyth with contributions from Jenny
preferred-citation:
  type: article
  title: The R package Rsubread is easier, faster, cheaper and better for alignment
    and quantification of RNA sequencing reads
  authors:
  - family-names: Liao
    given-names: Yang
    email: yang.liao@onjcri.org.au
  - family-names: Smyth
    given-names: Gordon K.
  - family-names: Shi
    given-names: Wei
    email: wei.shi@onjcri.org.au
  journal: Nucleic Acids Research
  year: '2019'
  volume: '47'
  issue: '8'
  doi: 10.1093/nar/gkz114
  start: e47
repository: https://bioc.r-universe.dev
commit: 15b807cfad9133bcbd2f9de14c81307b7e5caba3
url: http://bioconductor.org/packages/Rsubread
date-released: '2024-07-22'
contact:
- family-names: Shi
  given-names: Wei
  email: wei.shi@onjcri.org.au
- family-names: Liao
  given-names: Yang
  email: yang.liao@onjcri.org.au