To cite Rqc/Bioconductor in publications use:

  de Souza W, Carvalho BS, Lopes-Cendes I (2018). “Rqc: A Bioconductor
  Package for Quality Control of High-Throughput Sequencing Data.”
  _Journal of Statistical Software, Code Snippets_, *87*(2), 1-14.
  doi:10.18637/jss.v087.c02 <https://doi.org/10.18637/jss.v087.c02>.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {{Rqc}: A {Bioconductor} Package for Quality Control of High-Throughput Sequencing Data},
    author = {Welliton {de Souza} and Benilton S Carvalho and Iscia Lopes-Cendes},
    journal = {Journal of Statistical Software, Code Snippets},
    year = {2018},
    volume = {87},
    number = {2},
    pages = {1--14},
    doi = {10.18637/jss.v087.c02},
  }