Package: RnaSeqSampleSize
Type: Package
Title: RnaSeqSampleSize
Version: 2.23.0
Date: 2021-12-02
Authors@R: c(person("Shilin Zhao", "Developer", role = c("aut", "cre"),
                     email = "zhaoshilin@gmail.com"),
              person("Chung-I Li", role = "aut"),
              person("Yan Guo",  role = "aut"),
              person("Quanhu Sheng", role = "aut"),
              person("Yu Shyr",role = "aut"))
Description: RnaSeqSampleSize package provides a sample size
        calculation method based on negative binomial model and the
        exact test for assessing differential expression analysis of
        RNA-seq data. It controls FDR for multiple testing and utilizes
        the average read count and dispersion distributions from real
        data to estimate a more reliable sample size. It is also
        equipped with several unique features, including estimation for
        interested genes or pathway, power curve visualization, and
        parameter optimization.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 4.0.0), ggplot2, RnaSeqSampleSizeData
Imports: biomaRt,edgeR,heatmap3,matlab,KEGGREST,methods,grDevices,
        graphics, stats, Rcpp (>=
        0.11.2),recount,ggpubr,SummarizedExperiment,tidyr,dplyr,tidyselect,utils
LinkingTo: Rcpp
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, testthat
biocViews: ImmunoOncology, ExperimentalDesign, Sequencing, RNASeq,
        GeneExpression, DifferentialExpression
RoxygenNote: 7.1.2
Encoding: UTF-8
Config/pak/sysreqs: cmake make libbz2-dev libicu-dev liblzma-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev libx11-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:54:02 UTC
RemoteUrl: https://github.com/bioc/RnaSeqSampleSize
RemoteRef: HEAD
RemoteSha: 19363e32ead9b512342e993d3d7a429fe52fdff6
NeedsCompilation: yes
Packaged: 2026-06-18 11:24:40 UTC; root
Author: Shilin Zhao Developer [aut, cre],
  Chung-I Li [aut],
  Yan Guo [aut],
  Quanhu Sheng [aut],
  Yu Shyr [aut]
Maintainer: Shilin Zhao Developer <zhaoshilin@gmail.com>