| Title: | RnBeads.hg19 |
|---|---|
| Description: | Automatically generated RnBeads annotation package for the assembly hg19. |
| Authors: | RnBeadsAnnotationCreator |
| Maintainer: | RnBeadsAnnotationCreator <[email protected]> |
| License: | GPL-3 |
| Version: | 1.45.0 |
| Built: | 2026-10-10 10:53:04 UTC |
| Source: | https://github.com/bioc/RnBeads.hg19 |
Scaffold of annotation tables for HG19. This structure is automatically loaded upon initialization of the annotation,
that is, by the first valid call to any of the following functions: rnb.get.assemblies,
rnb.get.chromosomes, rnb.get.annotation, rnb.set.annotation,
rnb.get.mapping, rnb.annotation.size. Adding an annotation amounts to attaching its
table(s) and mapping structures to this scaffold.
list of four elements - "regions", "sites", "controls" and "mappings".
These elements are described below.
"regions"list of NULLs; the names of the elements correspond to the built-in
region annotation tables. Once the default annotations are loaded, the attribute "builtin" is
a logical vector storing, for each region annotation, whether it is the default (built-in) or
custom.
"sites"list of NULLs; the names of the elements correspond to the site and
probe annotation tables.
"controls"list of NULLs; the names of the elements correspond to the control
probe annotation tables. The attribute "sites" is a character vector pointing to the
site annotation that encompasses the respective control probes.
"mappings"list of NULLs; the names of the elements correspond to the built-in
region annotation tables.
Yassen Assenov
This a a list of all regions available for the annotation.
regionsregions
list of NULLs; the names of the elements correspond to the built-in
region annotation tables. Once the default annotations are loaded, the attribute "builtin" is
a logical vector storing, for each region annotation, whether it is the default (built-in) or
custom.
Michael Scherer
A small example dataset for testing RnBeads' basic functionality.
data(small.example.object)data(small.example.object)
RnBeadRawSet-class object with 12 samples and 1,736 sites. It is an example
object obtained from Illumina Infinium 450K BeadChip and contains coverage, intensity,
and detection p-values. No preprocessing steps have been performed.
Michael Scherer
This a a list of all sites available for the annotation.
sitessites
list of NULLs; the names of the elements correspond to the site and
probe annotation tables.
Michael Scherer