Package 'Rhtslib'

Title: HTSlib high-throughput sequencing library as an R package
Description: This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Authors: Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb]
Maintainer: Hervé Pagès <[email protected]>
License: LGPL (>= 2)
Version: 3.1.0
Built: 2024-07-17 11:32:36 UTC
Source: https://github.com/bioc/Rhtslib

Help Index

An R packaged HTSlib 1.18

Description

This package is interesting to package developers only, and provides a compiled HTSlib for developers to use in their own packages. See the vignette for instructions on use.

Details

Instructions for use are in the vignette, available with browseVignettes(package="Rhtslib")

Author(s)

Nathaniel Hayden [email protected]

References

The HTSlib included in the package is based on release 1.18 of HTSlib found at https://github.com/samtools/htslib/releases/

See Also

pkgconfig

Examples

packageDescription('Rhtslib')
Rhtslib:::htsVersion()

Compiler configuration arguments for use of Rhtslib

Description

This function prints values for PKG_LIBS and PKG_CPPFLAGS variables for use in Makevars files. See vignette("Rhtslib") for details. The environment variable RHTSLIB_RPATH can be used to over-ride the inferred location of the installed package.

Usage

pkgconfig(opt = c("PKG_LIBS", "PKG_CPPFLAGS"))

Arguments

opt

A scalar character from the list of available options; default is PKG_LIBS.

Value

The function prints the PKG_LIBS or PKG_CPPFLAGS value and returns an invisible NULL.

Author(s)

Nathaniel Hayden mailto:[email protected]

Examples

pkgconfig("PKG_LIBS")

pkgconfig("PKG_CPPFLAGS")