Changes in version 2.7.1                        

    o   Updated email for Jessica L. Larson

                        Changes in version 2.3.8                        

    o   Minor bug fixes in NAMESPACE and DESCRIPTION and css

    o   Enhanced vignettes to include information on our website and publication

    o   Enhanced vignettes to clarify use of .modifyDF()

                        Changes in version 2.0.0                        

    o   HTML reports are now represented by the HTMLReportRef referenceClass

    o   HTML output now fully customizable via .toHTML, .toDF and .modifyDF arguments to publish (see vignette)

    o   Publication mechanism is abstracted and customizable via ReportHandlers class

    o   ReportingTools output can be used within knitr documents and shiny Web applications (see vignettes knitr.Rmd and shiny.Rnw)

    o   Persistent representation of the HTML report being created is stored and accessible in the .reportDOM field of HTMLReportRef objects

    o   [[ and [[<- methods created for HTMLReportRef objects which allow selection, replacement and insertion of objects directly into reports

    o   Publish generic now accepts a 'name' argument.

    o   Existing reports can be read in via readReport, modified (via publish, [[<-, or direct manipulation of .reportDOM), and rewritten to file

    o   Path generic now returns a list/vector of the location slot values of the attached ReportHandlers object(s). These can be paths, connections, or other indications of report destination.

    o   Link generic function provided to build tables/sets of HTML links

    o   Added support for publishing ggbio and recordedplot objects

    o   CSS changed to Twitter Bootstrap

    o   Bugfixes to how NAs are handled when filtering and sorting columns

    o   New methods to handle output from running a glmLRT test in edgeR or nbinomTest in DESeq

    o   DEPRECATED: HTMLReport class is superseded by HTMLReportRef

    o   DEPRECATED: publication of HTMLReportRefs directly to a report (in order to make an index page) is no longer supported. Use the Link function.

    o   DEPRECATED: the page generic is not meaningful for HTMLReportRef objects (not all of which have a corresponding connection) and is deprecated. Use path instead.