# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Repitools" in publications use:'
type: software
license: LGPL-2.0-or-later
title: 'Repitools: Epigenomic tools'
version: 1.51.0
abstract: Tools for the analysis of enrichment-based epigenomic data. Features include
  summarization and visualization of epigenomic data across promoters according to
  gene expression context, finding regions of differential methylation/binding, BayMeth
  for quantifying methylation etc.
authors:
- family-names: Robinson
  given-names: Mark
  email: mark.robinson@mls.uzh.ch
- family-names: Strbenac
  given-names: Dario
  email: dario.strbenac@sydney.edu.au
- family-names: Statham
  given-names: Aaron
  email: a.statham@garvan.org.au
- family-names: Riebler
  given-names: Andrea
  email: andrea.riebler@math.ntnu.no
preferred-citation:
  type: article
  title: 'Repitools: an R package for the analysis of enrichment-based epigenomic
    data'
  authors:
  - family-names: AL
    given-names: Statham
  - family-names: D
    given-names: Strbenac
  - family-names: MW
    given-names: Coolen
  - family-names: C
    given-names: Stirzaker
  - family-names: SJ
    given-names: Clark
  - family-names: MD
    given-names: Robinson
  journal: Bioinformatics
  volume: '26'
  year: '2010'
  start: '1659'
repository: https://bioc.r-universe.dev
date-released: '2021-11-21'
contact:
- family-names: Robinson
  given-names: Mark
  email: mark.robinson@mls.uzh.ch
references:
- type: article
  title: Copy-number-aware differential analysis of quantitative DNA sequencing data
  authors:
  - family-names: MD
    given-names: Robinson
  - family-names: D
    given-names: Strbenac
  - family-names: C
    given-names: Stirzaker
  - family-names: AL
    given-names: Statham
  - family-names: J
    given-names: Song
  - family-names: TP
    given-names: Speed
  - family-names: SJ
    given-names: Clark
  journal: Genome Research
  volume: '22'
  year: '2012'
  start: '2393'
- type: article
  title: 'BayMeth: Improved DNA methylation quantification for affinity capture sequencing
    data using a flexible Bayesian approach'
  authors:
  - family-names: A
    given-names: Riebler
  - family-names: M
    given-names: Menigatti
  - family-names: JZ
    given-names: Song
  - family-names: AL
    given-names: Statham
  - family-names: C
    given-names: Stirzaker
  - family-names: 'N'
    given-names: Mahmud
  - family-names: CA
    given-names: Mein
  - family-names: SJ
    given-names: Clark
  - family-names: MD
    given-names: Robinson
  journal: Genome Biology
  year: '2014'
  volume: '15'
  start: R35