Package: RepViz
Type: Package
Title: Replicate oriented Visualization of a genomic region
Version: 1.29.0
Author: Thomas Faux, Kalle Rytkönen, Asta Laiho, Laura L. Elo
Maintainer: Thomas Faux, Asta Laiho <faux.thomas1@gmail.com>
 <asta.laiho@utu.fi>
Description: RepViz enables the view of a genomic region in a simple
        and efficient way. RepViz allows simultaneous viewing of both
        intra- and intergroup variation in sequencing counts of the
        studied conditions, as well as their comparison to the output
        features (e.g. identified peaks) from user selected data
        analysis methods.The RepViz tool is primarily designed for
        chromatin data such as ChIP-seq and ATAC-seq, but can also be
        used with other sequencing data such as RNA-seq, or
        combinations of different types of genomic data.
License: GPL-3
Encoding: UTF-8
RoxygenNote: 6.1.1
VignetteBuilder: knitr
Depends: R (>= 3.5.1), GenomicRanges (>= 1.30.0), Rsamtools (>=
        1.34.1), IRanges (>= 2.14.0), biomaRt (>= 2.36.0), S4Vectors
        (>= 0.18.0), graphics, grDevices, utils
Suggests: rmarkdown, knitr, testthat
biocViews: WorkflowStep, Visualization, Sequencing, ChIPSeq, ATACSeq,
        Software, Coverage, GenomicVariation
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:50:03 UTC
RemoteUrl: https://github.com/bioc/RepViz
RemoteRef: HEAD
RemoteSha: baa39d77a1aff453b2120af9c484aacde76b9d06
NeedsCompilation: no
Packaged: 2026-07-04 12:01:15 UTC; root