Package: RedeR
Type: Package
Title: Interactive visualization and manipulation of nested networks
Version: 3.9.0
Authors@R: 
    c(person("Xin", "Wang", role = "ctb"),
      person("Florian", "Markowetz", role = "ctb"),
      person("Mauro", "Castro", role = c("aut", "cre"),
              email = "mauro.a.castro@gmail.com",
              comment = c(ORCID = "0000-0003-4942-8131")))
Depends: R (>= 4.4), methods
Imports: scales, igraph
Suggests: knitr, rmarkdown, markdown, BiocStyle, TreeAndLeaf
SystemRequirements: Java Runtime Environment (Java>= 11)
Description: RedeR combines an R package with a stand-alone Java
        application for interactive visualization and manipulation of
        nested networks. Graph, node, and edge attributes can be
        configured using either graphical or command-line methods,
        following igraph syntax rules.
License: GPL-3
biocViews: GUI, GraphAndNetwork, Network, NetworkEnrichment,
        NetworkInference, Software, SystemsBiology
VignetteBuilder: knitr
BugReports: https://github.com/sysbiolab/RedeR/issues
URL: https://doi.org/10.1186/gb-2012-13-4-r29
Collate: AllChecks.R AllValidations.R AllClasses.R AllGenerics.R
        internalLegendMethods.R internalOtherMethods.R
        exportedCallMethods.R exportedOtherMethods.R
        exportedAddGraphMethods.R exportedGetGraphMethods.R
        exportedRelaxMethods.R exportedNestMethods.R
        exportedAttributeSeters.R exportedWrappers.R Misc.R zzz.R
Encoding: UTF-8
RoxygenNote: 7.3.2
Config/pak/sysreqs: libglpk-dev default-jdk libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:35:36 UTC
RemoteUrl: https://github.com/bioc/RedeR
RemoteRef: HEAD
RemoteSha: 50490c5fc2a94bbdd6ad8f11da34e038cd51bd5a
NeedsCompilation: no
Packaged: 2026-06-18 11:22:11 UTC; root
Author: Xin Wang [ctb],
  Florian Markowetz [ctb],
  Mauro Castro [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4942-8131>)
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>