Package: ReactomePA
Type: Package
Title: Reactome Pathway Analysis
Version: 1.99.2
Authors@R: c(person(given = "Guangchuang", family = "Yu",
	   	    email = "guangchuangyu@gmail.com",
		    role  = c("aut", "cre")),
	     person(given = "Vladislav", family = "Petyuk",
	     	    email = "petyuk@gmail.com",
		    role  = "ctb"))
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package provides functions for pathway analysis based
        on REACTOME pathway database. It implements enrichment
        analysis, gene set enrichment analysis, network-based
        enrichment analysis (NSEA) on the Reactome reaction graph,
        Bayesian term selection, weighted enrichment, and several
        functions for visualization. This package is not affiliated
        with the Reactome team.
Depends: R (>= 3.4.0)
Imports: AnnotationDbi, enrichplot, enrichit (>= 0.2.2), ggplot2 (>=
        3.3.5), ggraph, reactome.db, igraph, graphite, gson, Matrix,
        utils, yulab.utils (>= 0.1.5)
Suggests: clusterProfiler, knitr, rmarkdown, org.Hs.eg.db, prettydoc,
        testthat
VignetteBuilder: knitr
ByteCompile: true
License: GPL-2
URL: https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/GuangchuangYu/ReactomePA/issues
Packaged: 2026-09-24 19:33:58 UTC; root
biocViews: Pathways, Visualization, Annotation, MultipleComparison,
        GeneSetEnrichment, Reactome
Encoding: UTF-8
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-09-24 01:10:04 UTC
RemoteUrl: https://github.com/bioc/ReactomePA
RemoteRef: HEAD
RemoteSha: e295d309811933101f2e808814212d3244f5c6aa
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre],
  Vladislav Petyuk [ctb]