Package: ReUseData
Title: Reusable and reproducible Data Management
Version: 1.13.1
Authors@R: 
    person(given = "Qian",
           family = "Liu",
           role = c("aut", "cre"),
           email = "qian.liu@roswellpark.org",
           comment = c(ORCID = "0000-0003-1456-5099"))
Description: ReUseData is an _R/Bioconductor_ software tool to provide
        a systematic and versatile approach for standardized and
        reproducible data management. ReUseData facilitates
        transformation of shell or other ad hoc scripts for data
        preprocessing into workflow-based data recipes. Evaluation of
        data recipes generate curated data files in their generic
        formats (e.g., VCF, bed). Both recipes and data are cached
        using database infrastructure for easy data management and
        reuse. Prebuilt data recipes are available through ReUseData
        portal ("https://rcwl.org/dataRecipes/") with full annotation
        and user instructions. Pregenerated data are available through
        ReUseData cloud bucket that is directly downloadable through
        "getCloudData()".
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Imports: Rcwl, RcwlPipelines, BiocFileCache, S4Vectors, stats, tools,
        utils, methods, jsonlite, yaml, basilisk
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
Config/testthat/edition: 3
VignetteBuilder: knitr
biocViews: Software, Infrastructure, DataImport, Preprocessing,
        ImmunoOncology
License: GPL-3
URL: https://github.com/rworkflow/ReUseData
BugReports: https://github.com/rworkflow/ReUseData/issues
Config/Bioconductor/UnsupportedPlatforms: windows
Config/pak/sysreqs: cmake libglpk-dev make libgit2-dev libicu-dev
        libpng-dev libssh2-1-dev libuv1-dev libxml2-dev libssl-dev
        python3 libx11-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-29 18:37:40 UTC
RemoteUrl: https://github.com/bioc/ReUseData
RemoteRef: HEAD
RemoteSha: 8d2f1ee0ddf4904ca5374179620916d86b311604
NeedsCompilation: no
Packaged: 2026-07-04 23:49:29 UTC; root
Author: Qian Liu [aut, cre] (ORCID: <https://orcid.org/0000-0003-1456-5099>)
Maintainer: Qian Liu <qian.liu@roswellpark.org>