NEWS

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RcwlPipelines 1.7.7 (2021-02-24)

• Moved all recipes to https://github.com/rworkflow/RcwlRecipes.
• Added new core functions: cwlUpdate, cwlSearch and cwlLoad.
• Core functions return a 'cwlHub' object.

RcwlPipelines 1.1.14 (2019-10-21)

• Add pvactools neoantigen prediction pipeline

RcwlPipelines 1.1.8 (2019-08-22)

• Add more Somatic Variant Callers: VarScan2, LoFreq, MuSE, SomaticSniper, VarDict, lancet, manta, strelka2

RcwlPipelines 1.1.5 (2019-07-19)

• Structure updates: export all tools and pipelines.
• Added GATK4 Mutect2 tools and pipelines.
• Added Command and Container to metadata of cwlTools.
• Vignette updated.

RcwlPipelines 1.1.2 (2019-05-22)

• fix samtools index bug for cwltool 2019

RcwlPipelines 1.0.1 (2019-05-06)

• fix mc3 path bug.

RcwlPipelines 0.99.11 (2019-03-27)

• 10 more tools were added.

RcwlPipelines 0.99.10 (2019-03-27)

• Submitted to Bioconductor
• 27 tools were collected.