NEWS

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RcisTarget 1.15

• Default database version has been updated to v10-clust (including the motif annotations in the package)
• New function: showLogo() shows the motif enrichment table as HTML.
• Fix for maxRank checks: Now takes into account number of genes/regions in the database.
• Support for new database format
• importAnnotations(): Now adds the imported file name as attribute

RcisTarget 1.11

• importRankings() updates for extended compatibility: * indexCol by default is now 'NULL', which will take the first column. If it is set to any other column, that one will be used instead.

RcisTarget 1.7

• New function: reRank
• ImportRankings: Added arguments "indexCol" and "warnMissingColumns"
• Class rankingRcisTarget: Added methods rownames and colnames
• Support for .parquet databases

RcisTarget 1.3

• Added function: getMotifAnnotation

RcisTarget 0.99.7

• Main update: Re-formatted ranking databases. They are now loaded from .feather files (and therefore, they are transposed: motifs are stored as rows, and genes/regions as columns, which allows to load only specific genes/region)

RcisTarget 0.99.6

• Main update: Re-formatted annotation database. For easier subsetting.

RcisTarget 0.99.1

• Main update: New class for the Rankings (rankingRcisTarget)

RcisTarget 0.7

• Converted the ranking databases to an S4 class.

RcisTarget 0.6

• Added function addLogo()
• AUC is now returned as a class