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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Rbowtie2" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'Rbowtie2: An R Wrapper for Bowtie2 and AdapterRemoval'
version: 2.11.0
doi: 10.1093/bioinformatics/bty141
abstract: This package provides an R wrapper of the popular bowtie2 sequencing reads
  aligner and AdapterRemoval, a convenient tool for rapid adapter trimming, identification,
  and read merging. The package contains wrapper functions that allow for genome indexing
  and alignment to those indexes. The package also allows for the creation of .bam
  files via Rsamtools.
authors:
- family-names: Wei
  given-names: Zheng
  email: wzweizheng@qq.com
- family-names: Zhang
  given-names: Wei
  email: weizhang0505@126.com
preferred-citation:
  type: article
  title: 'esATAC: an easy-to-use systematic pipeline for ATAC-seq data analysis'
  authors:
  - family-names: Wei
    given-names: Zheng
    email: wzweizheng@qq.com
  - family-names: Zhang
    given-names: Wei
    email: weizhang0505@126.com
  - family-names: Fang
    given-names: Huan
  - family-names: Li
    given-names: Yanda
  - family-names: Wang
    given-names: Xiaowo
  journal: Bioinformatics
  year: '2018'
  doi: 10.1093/bioinformatics/bty141
repository: https://bioc.r-universe.dev
date-released: '2021-10-05'
contact:
- family-names: Wei
  given-names: Zheng
  email: wzweizheng@qq.com