Package: Rbowtie
Type: Package
Title: R bowtie wrapper
Version: 1.53.1
Date: 2026-07-29
Authors@R: c(person("Florian", "Hahne", role = c("aut")),
             person("Anita", "Lerch", role = c("aut")),
             person("Michael", "Stadler", role = c("aut", "cre"), 
                    email = "michael.stadler@fmi.ch", 
                    comment = c(ORCID = "0000-0002-2269-4934")))
Imports: utils
Suggests: testthat, parallel, BiocStyle, knitr, rmarkdown
SystemRequirements: GNU make
Description: This package provides an R wrapper around the popular
        bowtie short read aligner and around SpliceMap, a de novo
        splice junction discovery and alignment tool. The package is
        used by the QuasR bioconductor package. We recommend to use the
        QuasR package instead of using Rbowtie directly.
License: Artistic-2.0 | file LICENSE
LazyLoad: yes
URL: https://github.com/fmicompbio/Rbowtie
BugReports: https://github.com/fmicompbio/Rbowtie/issues
biocViews: Sequencing, Alignment
Archs: x64
VignetteBuilder: knitr
Config/pak/sysreqs: make
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-29 14:49:03 UTC
RemoteUrl: https://github.com/bioc/Rbowtie
RemoteRef: HEAD
RemoteSha: 7ca814fdd080e87c2914719eabf777c7454b725f
NeedsCompilation: yes
Packaged: 2026-10-31 11:51:21 UTC; root
Author: Florian Hahne [aut],
  Anita Lerch [aut],
  Michael Stadler [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2269-4934>)
Maintainer: Michael Stadler <michael.stadler@fmi.ch>